What is BDDS?

BDDS is a NIH Center of Excellence developing new approaches, methods, software tools, and related resources for advancing Big Data science in the context of biomedical research.

Tutorials

Motivating Examples
minid Minid
Lightweight, globally unique identifiers for data products.
BDBag Tools BDBag Tools
A set of tools for building and working with "BDBags", which are sets data files bundeled together using a hierarchical file packaging format based on the Library of Congress' "BagIt" format.
iobox IObox
A collection of Extract, Transform, Load (ETL) utilities for ERMrest+Hatrac
graphic ERMrest
A general relational data storage service for web-based, data-oriented collaboration
bdqc BDQC
An extensible Python3 framework for context-agnostic file-based data validation
Globus Genomics BDDS Globus Genomics
BDDS Globus Genomics provides a platform for Cloud-based Informatics Processing.
Panther PANTHER
A Classification System designed to classify proteins and their genes to facilitate high-throughput analysis.
SOCR Analytics Dashboard SOCR Analytics Dashboard
SOCR Analytics Dashboard combines and integrates multiple socioeconomic and medical datasets using big data analytics, in order to provide a lightweight, scalable platform for drawing inferences related to medical care, sociology, and economy in the United States.
LONI Pipeline LONI Pipeline
A Workflow application primarily aimed at computational scientists.
Globus Globus
Globus gives researchers everywhere access to a fast, powerful data management service that's easy to use.
Trans-Proteomic Pipeline Trans-Proteomic Pipeline
The Trans-Proteomic Pipeline (TPP) includes all of the steps of the ISB MS/MS analysis pipeline.
Peptide Atlas Peptide Atlas
PeptideAtlas is a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments.